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    LOC4340197 U-box domain-containing protein 70-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340197, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4340197
    Gene description
    U-box domain-containing protein 70-like
    Locus tag
    OSNPB_060159400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340197 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (3195722..3199762)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (3035356..3039391)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4340193 Neighboring gene uncharacterized LOC4340194 Neighboring gene ABC transporter C family member 10 Neighboring gene histone H3.2 Neighboring gene U-box domain-containing protein 70-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Hsp90 protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 70-like
    Names
    Os06g0159400
    P0702F05.32
    putative heat shock protein STI
    putative stress inducible protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      3195722..3199762
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787430.3 → XP_015642916.1  U-box domain-containing protein 70-like isoform X1

      UniProtKB/TrEMBL
      A2Y9L5, A3B8L3, Q5VMX4
      Conserved Domains (5) summary
      smart00504
      Location:349 → 412
      Ubox; Modified RING finger domain
      PLN03088
      Location:166 → 277
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      TIGR02917
      Location:38 → 260
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:164 → 189
      TPR; TPR repeat [structural motif]
      cd16655
      Location:352 → 390
      RING-Ubox_WDSUB1_like; U-box domain, a modified RING finger [structural motif]

    2. XM_066311806.1 → XP_066167903.1  U-box domain-containing protein 70-like isoform X2

    RNA

    1. XR_003242940.2 RNA Sequence

    2. XR_010742111.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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