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    LOC4345502 pre-mRNA cleavage factor Im 25 kDa subunit 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345502, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4345502
    Gene description
    pre-mRNA cleavage factor Im 25 kDa subunit 1
    Locus tag
    OSNPB_080398800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1051_A08.9; OJ1198_B10.21
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    Genomic context

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    See LOC4345502 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (19167669..19169419, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (19031534..19033302, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene hypersensitive-induced response protein 1-like Neighboring gene protein PXR1 Neighboring gene aminopeptidase M1-B-like Neighboring gene uncharacterized LOC107277262 Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR AU-rich region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA cleavage factor Im 25 kDa subunit 1
    Names
    Os08g0398800
    putative cleavage and polyadenylation specific factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422563.1 → NP_001409492.1  pre-mRNA cleavage factor Im 25 kDa subunit 1

      Status: VALIDATED

      Source sequence(s)
      CI015847, CI075324, CI267736, CI358540, CI599811, CI760096
      UniProtKB/TrEMBL
      A3BSV7, Q6ZIV4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      19167669..19169419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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