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    LOC4345873 serine/threonine protein kinase OSK4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345873, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4345873
    Gene description
    serine/threonine protein kinase OSK4-like
    Locus tag
    OSNPB_080484600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OSK4; OSK24; SNRK1B; OsJ_27714
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    Genomic context

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    See LOC4345873 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24082102..24087244)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (23942242..23947376)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345871 Neighboring gene phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like Neighboring gene trihelix transcription factor ASIL2 Neighboring gene uncharacterized LOC4345875

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine protein kinase OSK4
    Names
    OSNPB_080484600
    Os08g0484600
    P0419H09.18
    SNF1-related kinase 1B
    SUCROSE NON-FERMENTING-1 related protein kinase 1B
    Serine/threonine protein kinase OSK24
    SnRK1b protein kinase
    carbon catabolite-derepressing protein kinase
    serine/threonine protein kinase(OSK4)
    NP_001409536.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422607.1 → NP_001409536.1  serine/threonine protein kinase OSK4

      Status: VALIDATED

      Source sequence(s)
      AK072723, CI618415
      UniProtKB/Swiss-Prot
      B8BBT7, Q852Q1, Q9ZRJ3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24082102..24087244
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q852Q1.1 GenPept UniProtKB/Swiss-Prot:Q852Q1

    Gene LinkOut

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    Research Materials