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    LOC4332842 zinc finger protein CONSTANS-LIKE 13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332842, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4332842
    Gene description
    zinc finger protein CONSTANS-LIKE 13
    Locus tag
    OSNPB_030351100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332842 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (13208797..13211372)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (13152963..13155596)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable nucleolar protein 5-2 Neighboring gene uncharacterized LOC136355578 Neighboring gene divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic Neighboring gene inactive beta-amylase 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein CONSTANS-LIKE 13
    Names
    Os03g0351100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417779.1 → NP_001404708.1  zinc finger protein CONSTANS-LIKE 13

      Status: VALIDATED

      Source sequence(s)
      AK101822, C71664, CB654806, CB678922, CI076051, CI244323
      UniProtKB/TrEMBL
      A2XGP2, O82112, Q0DRW0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      13208797..13211372
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776839.3 → XP_015632325.1  zinc finger protein CONSTANS-LIKE 13 isoform X1

      UniProtKB/TrEMBL
      B9F8G2
      Conserved Domains (3) summary
      smart00336
      Location:38 → 66
      BBOX; B-Box-type zinc finger
      pfam06203
      Location:356 → 399
      CCT; CCT motif
      pfam15321
      Location:291 → 370
      ATAD4; ATPase family AAA domain containing 4
    Nucleotide Protein
    Heading Accession and Version

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