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    LOC4325218 metallothionein-like protein 2A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325218, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4325218
    Gene description
    metallothionein-like protein 2A
    Locus tag
    OSNPB_010149800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MT-2; MT2A; OsMT-2; OsMT2a; rgMT-2; OsMT2-1; OsJ_00383; OsMT-I-2a
    Expression
    Ubiquitous expression in mature seeds (RPKM 870.7), roots after flowering (RPKM 373.1) and 6 other tissues See more
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    Genomic context

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    See LOC4325218 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2701117..2703057, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2693184..2695095, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene histone H2B.4 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At3g47570 Neighboring gene uncharacterized LOC4324515 Neighboring gene very-long-chain enoyl-CoA reductase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. RNA expression patterns of a type 2 metallothionein-like gene from rice. Hsieh HM, et al. Plant Mol Biol, 1996 Nov. PMID 8980501

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    metallothionein-like protein 2A
    Names
    Class I metallothionein-like protein 2A
    LOC_Os01g05650
    P0434B04.33
    metallothionein-like type 2
    putative metallothionein-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406229.1 → NP_001393158.1  metallothionein-like protein 2A

      Status: VALIDATED

      Source sequence(s)
      C98173, CI267281, CV724695, CV733748
      UniProtKB/Swiss-Prot
      A2ZPA2, P94029, Q0JQN6, Q7F7X9
      UniProtKB/TrEMBL
      A2WKP7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      2701117..2703057 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P94029.1 GenPept UniProtKB/Swiss-Prot:P94029

    Gene LinkOut

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