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    LOC4349747 two-component response regulator ORR9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349747, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4349747
    Gene description
    two-component response regulator ORR9
    Locus tag
    OSNPB_110143300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RR9; OsRR9; OsRRA1; OsJ_32929
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    Genomic context

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    See LOC4349747 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (2058381..2060365)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (2013375..2015321)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase SIRP1-like Neighboring gene cytochrome P450 90A3-like Neighboring gene DNA-directed RNA polymerase V subunit 5A Neighboring gene L-galactono-1,4-lactone dehydrogenase 1, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of a type-A response regulator alters rice morphology and cytokinin metabolism. Hirose N, et al. Plant Cell Physiol, 2007 Mar. PMID 17293362
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    two-component response regulator ORR9
    Names
    A-type response regulator
    LOC_Os11g04720
    typeA response regulator 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404443.1 → NP_001391372.1  two-component response regulator ORR9

      Status: VALIDATED

      Source sequence(s)
      BT132381, CF293858, CI018033, CI167781
      UniProtKB/Swiss-Prot
      A0A0P0XYQ2, Q2RAP2, Q2RAP3, Q4GZK2
      UniProtKB/TrEMBL
      A0A0P0XZ24

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      2058381..2060365
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2RAP3.2 GenPept UniProtKB/Swiss-Prot:Q2RAP3

    Gene LinkOut

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