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    LOC9266557 mannan endo-1,4-beta-mannosidase 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266557, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC9266557
    Gene description
    mannan endo-1,4-beta-mannosidase 3-like
    Locus tag
    OSNPB_030828300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in mature seeds (RPKM 24.1), flowers (RPKM 2.9) and 1 other tissue See more
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    Genomic context

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    See LOC9266557 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (35764727..35766567)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (34792003..34793877)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 72-like Neighboring gene 50S ribosomal protein L18, chloroplastic-like Neighboring gene mannan endo-1,4-beta-mannosidase 4-like Neighboring gene cation/H(+) antiporter 19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mannan endo-1,4-beta-mannosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mannan endo-1,4-beta-mannosidase 3-like
    Names
    Os03g0828300
    mannan endo-1,4-beta-mannosidase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      35764727..35766567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773757.3 → XP_015629243.2  mannan endo-1,4-beta-mannosidase 3-like

      UniProtKB/Swiss-Prot
      Q0DM48, Q10B69, Q8SAY1
      UniProtKB/TrEMBL
      A3APA9
      Conserved Domains (1) summary
      COG3934
      Location:108 → 399
      COG3934; Endo-1,4-beta-mannosidase [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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