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    LOC4349509 plastidal glycolate/glycerate translocator 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349509, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4349509
    Gene description
    plastidal glycolate/glycerate translocator 1, chloroplastic
    Locus tag
    OSNPB_100578800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349509 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23765950..23771367, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (23075394..23079268, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene cellulose synthase-like protein D1 Neighboring gene uncharacterized LOC4349506 Neighboring gene putative pentatricopeptide repeat-containing protein At1g16830 Neighboring gene probable methyltransferase At1g29790 Neighboring gene choline-phosphate cytidylyltransferase 2 Neighboring gene 4-coumarate--CoA ligase-like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    plastidal glycolate/glycerate translocator 1, chloroplastic
    Names
    Os10g0578800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23765950..23771367 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758748.3 → XP_015614234.1  plastidal glycolate/glycerate translocator 1, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A5S6RAY3, B8BIF1, Q7XBT7, Q9FRQ2
      Conserved Domains (1) summary
      pfam04172
      Location:270 → 431
      LrgB; LrgB-like family

    2. XM_015758751.3 → XP_015614237.1  plastidal glycolate/glycerate translocator 1, chloroplastic isoform X3

      UniProtKB/TrEMBL
      B8BIF1
      Conserved Domains (2) summary
      pfam03788
      Location:59 → 146
      LrgA; LrgA family
      pfam04172
      Location:239 → 400
      LrgB; LrgB-like family

    3. XM_066304784.1 → XP_066160881.1  plastidal glycolate/glycerate translocator 1, chloroplastic isoform X5

    4. XM_015758752.3 → XP_015614238.1  plastidal glycolate/glycerate translocator 1, chloroplastic isoform X4

      UniProtKB/TrEMBL
      B9G770
      Conserved Domains (2) summary
      pfam03788
      Location:59 → 146
      LrgA; LrgA family
      cl00596
      Location:270 → 398
      LrgB; LrgB-like family

    5. XM_015758749.3 → XP_015614235.1  plastidal glycolate/glycerate translocator 1, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B8BIF1
      Conserved Domains (2) summary
      pfam03788
      Location:33 → 120
      LrgA; LrgA family
      pfam04172
      Location:244 → 405
      LrgB; LrgB-like family

    6. XM_066304785.1 → XP_066160882.1  plastidal glycolate/glycerate translocator 1, chloroplastic isoform X6

      UniProtKB/TrEMBL
      Q336N0
    Nucleotide Protein
    Heading Accession and Version

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