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    LOC4331966 40S ribosomal protein S3a-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331966, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4331966
    Gene description
    40S ribosomal protein S3a-like
    Locus tag
    OSNPB_030200500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    T151; CYC07; RPS3A; OsJ_09804
    Expression
    Ubiquitous expression in flower buds (RPKM 308.2), flowers (RPKM 186.1) and 6 other tissues See more
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    Genomic context

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    See LOC4331966 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (5322104..5324588)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (5274902..5277197)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331964 Neighboring gene cysteine-rich and transmembrane domain-containing protein WIH2 Neighboring gene protein NPGR1 Neighboring gene surfeit locus protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Narrow Leaf21, encoding ribosomal protein RPS3A, controls leaf development in rice. Uzair M, et al. Plant Physiol, 2021 May 27. PMID 33591317, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Narrow Leaf21, encoding ribosomal protein RPS3A, controls leaf development in rice.
      Title: Narrow Leaf21, encoding ribosomal protein RPS3A, controls leaf development in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS1
    Names
    40S ribosomal protein S3a
    LOC_Os03g10340
    NP_001389015.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402086.1 → NP_001389015.1  small ribosomal subunit protein eS1

      Status: VALIDATED

      Source sequence(s)
      AK104243, CA999633, CB000387, CI544966, CI627420
      UniProtKB/Swiss-Prot
      P49397, Q10QD8
      UniProtKB/TrEMBL
      A0A0P0VUA6, A2XDL4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      5322104..5324588
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P49397.2 GenPept UniProtKB/Swiss-Prot:P49397

    Gene LinkOut

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