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    LOC4325730 probable serine/threonine-protein kinase At1g54610 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325730, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325730
    Gene description
    probable serine/threonine-protein kinase At1g54610
    Locus tag
    OSNPB_010367700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0043B10.7
    Expression
    Ubiquitous expression in flowers (RPKM 21.5), leaves before flowering (RPKM 21.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (15122413..15130516)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (15059427..15067553)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270146 Neighboring gene uncharacterized LOC4325729 Neighboring gene probable chromatin-remodeling complex ATPase chain Neighboring gene flavin-containing monooxygenase FMO GS-OX-like 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II CTD heptapeptide repeat kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cyclin-dependent protein kinase holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable serine/threonine-protein kinase At1g54610
    Names
    B1329D01.21
    Os01g0367700
    P0560B06.11
    P0784G04.17
    putative CRK1 protein
    putative cyclin dependent kinase C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      15122413..15130516
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765830.2 → XP_015621316.1  probable serine/threonine-protein kinase At1g54610 isoform X1

      UniProtKB/TrEMBL
      B8A880, Q5JJL6, Q93W00
      Conserved Domains (1) summary
      cd07840
      Location:99 → 383
      STKc_CDK9_like; Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

    2. XM_015765831.2 → XP_015621317.1  probable serine/threonine-protein kinase At1g54610 isoform X2

      UniProtKB/TrEMBL
      B8A880, Q5F1W2
      Conserved Domains (1) summary
      cd07840
      Location:99 → 383
      STKc_CDK9_like; Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases
    Nucleotide Protein
    Heading Accession and Version

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