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    LOC4349430 chlorophyllide a oxygenase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349430, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4349430
    Gene description
    chlorophyllide a oxygenase, chloroplastic-like
    Locus tag
    OSNPB_100567100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349430 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23165684..23169403, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22473500..22478044, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g21090-like Neighboring gene fluoride export protein 1 Neighboring gene uncharacterized LOC136353791 Neighboring gene SH2 domain-containing protein A Neighboring gene chlorophyllide a oxygenase, chloroplastic-like Neighboring gene nuclear intron maturase 2, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2 iron, 2 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chlorophyllide a oxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chlorophyllide a oxygenase, chloroplastic-like
    Names
    Os10g0567100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23165684..23169403 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758605.2 → XP_015614091.1  chlorophyllide a oxygenase, chloroplastic-like

      UniProtKB/TrEMBL
      A0A8J8Y7F8, B8BIB5, B9G730, Q0IVJ8, Q336R0, Q8S7D9
      Conserved Domains (1) summary
      PLN02281
      Location:32 → 535
      PLN02281; chlorophyllide a oxygenase
    Nucleotide Protein
    Heading Accession and Version

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