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    LOC4347176 trimethyltridecatetraene synthase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347176, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4347176
    Gene description
    trimethyltridecatetraene synthase
    Locus tag
    OSNPB_090441400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0046G12.6; OJ1344_B01.40
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    Genomic context

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    See LOC4347176 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (20767950..20770503)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16387706..16390391)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene trimethyltridecatetraene synthase Neighboring gene uncharacterized LOC136351940 Neighboring gene trimethyltridecatetraene synthase Neighboring gene small nucleolar RNA Z247

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trimethyltridecatetraene synthase
    Names
    Os09g0441400
    putative elicitor-inducible cytochrome P450

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      20767950..20770503
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756939.3 → XP_015612425.1  trimethyltridecatetraene synthase

      UniProtKB/TrEMBL
      A2Z1P8, Q0J1G6, Q69P73
      Conserved Domains (1) summary
      cd20618
      Location:67 → 498
      CYP71_clan; Plant cytochrome P450s, clan CYP71
    Nucleotide Protein
    Heading Accession and Version

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