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    LOC4349507 probable methyltransferase At1g29790 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349507, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349507
    Gene description
    probable methyltransferase At1g29790
    Locus tag
    OSNPB_100578600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23765950..23767435, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (23073410..23075292, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene cellulose synthase-like protein D1 Neighboring gene uncharacterized LOC4349506 Neighboring gene putative pentatricopeptide repeat-containing protein At1g16830 Neighboring gene plastidal glycolate/glycerate translocator 1, chloroplastic Neighboring gene choline-phosphate cytidylyltransferase 2 Neighboring gene 4-coumarate--CoA ligase-like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-adenosylmethionine-dependent methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable methyltransferase At1g29790
    Names
    Os10g0578600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23765950..23767435 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758753.3 → XP_015614239.1  probable methyltransferase At1g29790

      UniProtKB/TrEMBL
      Q336N1, Q9FRQ3
      Conserved Domains (1) summary
      cl17173
      Location:230 → 355
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version

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