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    LOC4324504 histone H2B.5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324504, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4324504
    Gene description
    histone H2B.5
    Locus tag
    OSNPB_010153300
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    H2B.5; OsJ_000408
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    Genomic context

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    See LOC4324504 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (2880218..2880965)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (2872095..2872865)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene histone H2B.6 Neighboring gene putative pentatricopeptide repeat-containing protein At5g59900 Neighboring gene aspartate--tRNA ligase, chloroplastic/mitochondrial Neighboring gene uncharacterized LOC4324506

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone H2B.5
    Names
    LOC_Os01g06010
    P0030H07.24
    putative histone H2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428131.1 → NP_001415060.1  histone H2B.5

      Status: PROVISIONAL

      Source sequence(s)
      BP184926, CI170210
      UniProtKB/Swiss-Prot
      A0A0P0UYB8, A2WKT4, Q94JE1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      2880218..2880965
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94JE1.1 GenPept UniProtKB/Swiss-Prot:Q94JE1

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