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    LOC4349429 fluoride export protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349429, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4349429
    Gene description
    fluoride export protein 1
    Locus tag
    OSNPB_100567000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349429 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23161176..23164902, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22468992..22473144, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At5g43822 Neighboring gene pentatricopeptide repeat-containing protein At2g21090-like Neighboring gene uncharacterized LOC136353791 Neighboring gene chlorophyllide a oxygenase, chloroplastic-like Neighboring gene SH2 domain-containing protein A Neighboring gene chlorophyllide a oxygenase, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fluoride transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fluoride transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fluoride export protein 1
    Names
    Os10g0567000
    UPF0695 membrane protein C977.11/PB8B6.06c
    fluoride export protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      23161176..23164902 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305018.1 → XP_066161115.1  fluoride export protein 1

      UniProtKB/TrEMBL
      B8BIB4, B9G729, Q108X7

    2. XM_015758604.3 → XP_015614090.1  fluoride export protein 1

      UniProtKB/TrEMBL
      B8BIB4, B9G729, Q108X7
      Conserved Domains (1) summary
      pfam02537
      Location:179 → 287
      CRCB; CrcB-like protein, Camphor Resistance (CrcB)

    3. XM_015758603.3 → XP_015614089.1  fluoride export protein 1

      UniProtKB/TrEMBL
      B8BIB4, B9G729, Q108X7
      Conserved Domains (1) summary
      pfam02537
      Location:179 → 287
      CRCB; CrcB-like protein, Camphor Resistance (CrcB)

    4. XM_015758602.3 → XP_015614088.1  fluoride export protein 1

      UniProtKB/TrEMBL
      B8BIB4, B9G729, Q108X7
      Conserved Domains (1) summary
      pfam02537
      Location:179 → 287
      CRCB; CrcB-like protein, Camphor Resistance (CrcB)
    Nucleotide Protein
    Heading Accession and Version

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