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    LOC4334929 pentatricopeptide repeat-containing protein At3g29230 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334929, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4334929
    Gene description
    pentatricopeptide repeat-containing protein At3g29230
    Locus tag
    OSNPB_040110500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (617687..620288, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (613779..616377, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene SWI/SNF complex subunit SWI3D Neighboring gene probable carbohydrate esterase At4g34215 Neighboring gene ranBP2-type zinc finger protein At1g67325 Neighboring gene putative disease resistance protein RGA1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At3g29230
    Names
    Os04g0110500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      617687..620288 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779970.3 → XP_015635456.1  pentatricopeptide repeat-containing protein At3g29230

      UniProtKB/TrEMBL
      A0A0P0W647, A3AQ78, Q25AD3, Q7XSV8
      Conserved Domains (2) summary
      PLN03077
      Location:29 → 522
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:320 → 347
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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