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    LOC4333007 calmodulin-binding transcription activator 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333007, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4333007
    Gene description
    calmodulin-binding transcription activator 3
    Locus tag
    OSNPB_030388500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333007 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (15850954..15860004)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (15498618..15507734)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene copper-transporting ATPase PAA1, chloroplastic Neighboring gene uncharacterized LOC107280297 Neighboring gene transcription factor MYB93 Neighboring gene uncharacterized LOC4333008

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calmodulin-binding transcription activator 3
    Names
    Os03g0388500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      15850954..15860004
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775603.3 → XP_015631089.1  calmodulin-binding transcription activator 3 isoform X1

      UniProtKB/TrEMBL
      A3AIM7, Q75LP6
      Conserved Domains (6) summary
      smart00015
      Location:873 → 894
      IQ; Calmodulin-binding motif
      cd00204
      Location:636 → 734
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01833
      Location:444 → 530
      TIG; IPT/TIG domain
      pfam03859
      Location:22 → 136
      CG-1; CG-1 domain
      pfam13637
      Location:676 → 734
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:642 → 673
      ANK; ANK repeat [structural motif]

    2. XM_015775606.3 → XP_015631092.1  calmodulin-binding transcription activator 3 isoform X3

      UniProtKB/TrEMBL
      A3AIM7, Q75LP6
      Conserved Domains (6) summary
      smart00015
      Location:873 → 894
      IQ; Calmodulin-binding motif
      cd00204
      Location:636 → 734
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01833
      Location:444 → 530
      TIG; IPT/TIG domain
      pfam03859
      Location:22 → 136
      CG-1; CG-1 domain
      pfam13637
      Location:676 → 734
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:642 → 673
      ANK; ANK repeat [structural motif]

    3. XM_015775604.3 → XP_015631090.1  calmodulin-binding transcription activator 3 isoform X2

      UniProtKB/TrEMBL
      A3AIM7, Q75LP6
      Conserved Domains (5) summary
      smart00015
      Location:872 → 893
      IQ; Calmodulin-binding motif
      sd00045
      Location:641 → 672
      ANK; ANK repeat [structural motif]
      pfam01833
      Location:443 → 529
      TIG; IPT/TIG domain
      pfam03859
      Location:24 → 136
      CG-1; CG-1 domain
      pfam12796
      Location:646 → 736
      Ank_2; Ankyrin repeats (3 copies)

    4. XM_066308345.1 → XP_066164442.1  calmodulin-binding transcription activator 3 isoform X4

    5. XM_066308346.1 → XP_066164443.1  calmodulin-binding transcription activator 3 isoform X5

    Nucleotide Protein
    Heading Accession and Version

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