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    LOC4342471 small RNA 2'-O-methyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342471, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342471
    Gene description
    small RNA 2'-O-methyltransferase
    Locus tag
    OSNPB_070164000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    WAF1
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    Genomic context

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    See LOC4342471 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (3489527..3494796, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (3429394..3434768, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene ubiquitin C-terminal hydrolase 12 Neighboring gene pentatricopeptide repeat-containing protein At3g62890 Neighboring gene histone deacetylase 15 Neighboring gene protein CHLORORESPIRATORY REDUCTION 42, chloroplastic Neighboring gene syntaxin-132-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. WAVY LEAF1, an ortholog of Arabidopsis HEN1, regulates shoot development by maintaining MicroRNA and trans-acting small interfering RNA accumulation in rice. Abe M, et al. Plant Physiol, 2010 Nov. PMID 20805329, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables O-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in piRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in siRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small RNA 2'-O-methyltransferase
    Names
    Os07g0164000
    P0428D12.120
    WAVY LEAF 1
    putative HEN1
    small RNA methyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      3489527..3494796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792394.3 → XP_015647880.1  small RNA 2'-O-methyltransferase

      UniProtKB/TrEMBL
      A0A8J8YAT2, B9FVM9, E0D8R0
      Conserved Domains (4) summary
      pfam08242
      Location:727 → 820
      Methyltransf_12; Methyltransferase domain
      pfam17842
      Location:371 → 509
      dsRBD2; Double-stranded RNA binding domain 2
      pfam18441
      Location:233 → 369
      Hen1_Lam_C; Hen1 La-motif C-terminal domain
      cl00054
      Location:63 → 98
      DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials