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    LOC4344628 pentatricopeptide repeat-containing protein At5g50390, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344628, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4344628
    Gene description
    pentatricopeptide repeat-containing protein At5g50390, chloroplastic
    Locus tag
    OSNPB_080138600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1119_D01.10
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 9.1), flowers (RPKM 5.7) and 6 other tissues See more
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    Genomic context

    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (2166701..2169845)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (2154418..2159143)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene basic blue protein Neighboring gene transcription factor ILR3 Neighboring gene protein VASCULATURE COMPLEXITY AND CONNECTIVITY-like Neighboring gene calcium/calmodulin-regulated receptor-like kinase 1 Neighboring gene uncharacterized LOC4344630

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Markers

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    pentatricopeptide repeat-containing protein At5g50390, chloroplastic
    Names
    Os08g0138600
    putative pentatricopeptide (PPR) repeat-containing protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      2166701..2169845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793690.3XP_015649176.2  pentatricopeptide repeat-containing protein At5g50390, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0XBS3, Q6ZKI7
      Conserved Domains (2) summary
      PLN03081
      Location:57746
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:341368
      PPR; PPR repeat [structural motif]