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    LOC4342642 probable prolyl 4-hydroxylase 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342642, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342642
    Gene description
    probable prolyl 4-hydroxylase 6
    Locus tag
    OSNPB_070194500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1715_A07.5; OJ1118_E12.24
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    Genomic context

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    See LOC4342642 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (5177980..5180468, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (5116523..5119153, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene glycine-rich cell wall structural protein 1 Neighboring gene uncharacterized LOC9267482 Neighboring gene hydroxyproline O-galactosyltransferase GALT6 Neighboring gene ras-related protein RABE1d

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen-proline 4-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable prolyl 4-hydroxylase 6
    Names
    Os07g0194500
    prolyl 4-hydroxylase alpha-1 subunit precursor-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      5177980..5180468 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789486.3 → XP_015644972.1  probable prolyl 4-hydroxylase 6

      UniProtKB/TrEMBL
      A0A0P0X3D5, Q0D7Z6, Q6ZL00
      Conserved Domains (3) summary
      PLN00052
      Location:11 → 319
      PLN00052; prolyl 4-hydroxylase; Provisional
      smart00254
      Location:277 → 317
      ShKT; ShK toxin domain
      smart00702
      Location:74 → 261
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    Nucleotide Protein
    Heading Accession and Version

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