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    LOC4340375 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340375, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4340375
    Gene description
    pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
    Locus tag
    OSNPB_060192500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340375 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (4824654..4831674)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (4659849..4667023)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene calcium uniporter protein 3, mitochondrial-like Neighboring gene hydroxyproline O-galactosyltransferase GALT3 Neighboring gene 26S proteasome regulatory subunit 7A-like Neighboring gene RING-H2 finger protein ATL3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
    Names
    OSJNBa0090D06.52-1
    OSJNBa0090D06.52-2
    Os06g0192500
    P0698A06.12-1
    P0698A06.12-2
    RNA helicase-like
    putative RNA helicase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      4824654..4831674
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785675.3 → XP_015641161.1  pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10

      UniProtKB/TrEMBL
      A2YA75, Q69TI7
      Conserved Domains (1) summary
      COG1643
      Location:29 → 691
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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