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    LOC4346297 uncharacterized LOC4346297 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346297, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346297
    Gene description
    uncharacterized LOC4346297
    Locus tag
    OSNPB_080557400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1150_A11.23
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    Genomic context

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    See LOC4346297 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (28036272..28040383, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27888905..27893045, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene 28 kDa ribonucleoprotein, chloroplastic Neighboring gene manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like Neighboring gene uncharacterized LOC4346296 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP71 Neighboring gene monodehydroascorbate reductase 4, cytosolic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    2. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4346297
    Names
    Os08g0557400
    protein tyrosine phosphatase-like protein
    putative low molecular weight phosphotyrosine protein
    putative low molecular weight protein-tyrosine-phosphatase slr0328

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      28036272..28040383 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794452.2 → XP_015649938.1  uncharacterized protein LOC4346297

      UniProtKB/TrEMBL
      B9FYI5, Q0J3R7, Q6ZJ11, Q84PD6
      Conserved Domains (1) summary
      cd16343
      Location:102 → 257
      LMWPTP; Low molecular weight protein tyrosine phosphatase
    Nucleotide Protein
    Heading Accession and Version

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