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    LOC4343036 BTB/POZ domain-containing protein At5g41330 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343036, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343036
    Gene description
    BTB/POZ domain-containing protein At5g41330
    Locus tag
    OSNPB_070419200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1123_B01.118
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    Genomic context

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    See LOC4343036 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (13539885..13543454)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (13384390..13389212)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343034 Neighboring gene cytochrome P450 709B2-like Neighboring gene thaumatin-like protein 1b Neighboring gene uncharacterized LOC136357506 Neighboring gene sterol 3-beta-glucosyltransferase UGT80A2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein At5g41330
    Names
    Os07g0419200
    P0025D09.134

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      13539885..13543454
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026027150.2 → XP_025882935.1  BTB/POZ domain-containing protein At5g41330

      UniProtKB/TrEMBL
      A2XVE6
      Conserved Domains (2) summary
      PRK12323
      Location:35 → 224
      PRK12323; DNA polymerase III subunit gamma/tau
      cd18316
      Location:6 → 85
      BTB_POZ_KCTD-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing proteins
    Nucleotide Protein
    Heading Accession and Version

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