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    LOC4329989 uncharacterized LOC4329989 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329989, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4329989
    Gene description
    uncharacterized LOC4329989
    Locus tag
    OSNPB_020617100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1014_H03.2; OJ1792_D02.27
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    Genomic context

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    See LOC4329989 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24954227..24960056, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24471498..24477472, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4329988 Neighboring gene uncharacterized LOC107277588 Neighboring gene uncharacterized LOC4329990 Neighboring gene CLIP-associated protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329989
    Names
    Os02g0617100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24954227..24960056 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768265.3 → XP_015623751.1  uncharacterized protein LOC4329989

      UniProtKB/TrEMBL
      A2X790, A3A933
      Conserved Domains (3) summary
      pfam12552
      Location:182 → 226
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:761 → 920
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:73 → 92
      VARLMGL; DUF761-associated sequence motif

    2. XM_015768266.3 → XP_015623752.1  uncharacterized protein LOC4329989

      UniProtKB/TrEMBL
      A2X790, A3A933
      Conserved Domains (3) summary
      pfam12552
      Location:182 → 226
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:761 → 920
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:73 → 92
      VARLMGL; DUF761-associated sequence motif
    Nucleotide Protein
    Heading Accession and Version

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