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    LOC4343952 multifunctional methyltransferase subunit TRM112 homolog A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343952, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343952
    Gene description
    multifunctional methyltransferase subunit TRM112 homolog A
    Locus tag
    OSNPB_070623000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4343952 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (26000703..26001412, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25774496..25775377, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized hydrolase YugF Neighboring gene signal peptidase complex-like protein DTM1 Neighboring gene calmodulin-binding transcription activator 1 Neighboring gene copper-transporting ATPase PAA1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-glutamine methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA (guanine-N7)-methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    multifunctional methyltransferase subunit TRM112 homolog A
    Names
    Os07g0623000
    P0524E08.108
    multifunctional methyltransferase subunit TRM112-like protein At1g22270

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      26000703..26001412 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789739.3 → XP_015645225.1  multifunctional methyltransferase subunit TRM112 homolog A

      UniProtKB/TrEMBL
      A0A0P0X8S8, A2YNU3, Q0D4J0, Q8LHL4
      Conserved Domains (1) summary
      cd21089
      Location:2 → 126
      Trm112-like; eukaryotic tRNA methyltransferase 112, a partner protein of both rRNA/tRNA and protein methyltransferases, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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