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    LOC4344370 uncharacterized LOC4344370 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344370, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344370
    Gene description
    uncharacterized LOC4344370
    Locus tag
    OSNPB_070691200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4344370 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29626653..29635994)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29392452..29401859)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277841 Neighboring gene COBRA-like protein 7 Neighboring gene probable pectinesterase/pectinesterase inhibitor 21 Neighboring gene senescence associated gene 20 Neighboring gene uncharacterized LOC136357314

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables D-alanine-D-alanine ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidoglycan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344370
    Names
    Os07g0691200
    P0034A04.101-1
    P0597G07.131-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29626653..29635994
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791933.3 → XP_015647419.1  uncharacterized protein LOC4344370

      UniProtKB/TrEMBL
      A0A0P0XAD7, B8B6A3, Q0D3E3, Q7XI67
      Conserved Domains (2) summary
      PRK01372
      Location:484 → 913
      ddl; D-alanine--D-alanine ligase; Reviewed
      PRK01966
      Location:73 → 428
      ddl; D-alanine--D-alanine ligase
    Nucleotide Protein
    Heading Accession and Version

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