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    LOC4347113 WAT1-related protein At4g30420 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347113, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347113
    Gene description
    WAT1-related protein At4g30420
    Locus tag
    OSNPB_090426100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1299_A11.18-1; OJ1299_A11.18-2
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    Genomic context

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    See LOC4347113 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (19828796..19834222, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (15450564..15456245, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene tetraspanin-8 Neighboring gene WAT1-related protein At4g28040 Neighboring gene WAT1-related protein At4g30420 Neighboring gene WAT1-related protein At4g30420

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WAT1-related protein At4g30420
    Names
    Os09g0426100
    nodulin MtN21-like protein
    putative MtN21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      19828796..19834222 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020205.2 → XP_025875990.1  WAT1-related protein At4g30420 isoform X2

      Conserved Domains (1) summary
      PLN00411
      Location:10 → 333
      PLN00411; nodulin MtN21 family protein; Provisional

    2. XM_015756356.2 → XP_015611842.1  WAT1-related protein At4g30420 isoform X1

      Conserved Domains (1) summary
      PLN00411
      Location:10 → 333
      PLN00411; nodulin MtN21 family protein; Provisional
    Nucleotide Protein
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