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    LOC4330594 amino acid transporter AVT6A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330594, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330594
    Gene description
    amino acid transporter AVT6A
    Locus tag
    OSNPB_020727100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 5.6), flower buds (RPKM 5.3) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30751369..30756255, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30259643..30265677, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein TIC 20-v, chloroplastic Neighboring gene transcription factor BIM2 Neighboring gene uncharacterized LOC136355199 Neighboring gene putative U-box domain-containing protein 42 Neighboring gene small nucleolar RNA R160

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amino acid transporter AVT6A
    Names
    B1121A12.26
    Os02g0727100
    putative amino acid transporter
    sodium-coupled neutral amino acid transporter 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30751369..30756255 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022876.2 → XP_025878661.1  amino acid transporter AVT6A

      UniProtKB/TrEMBL
      A2X963, A3AAY8, Q0DXY0, Q6Z336
      Conserved Domains (1) summary
      cl00456
      Location:34 → 410
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    2. XM_015767965.3 → XP_015623451.1  amino acid transporter AVT6A

      UniProtKB/TrEMBL
      A2X963, A3AAY8, Q0DXY0, Q6Z336
      Conserved Domains (1) summary
      cl00456
      Location:34 → 410
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

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