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    LOC4329627 exosome complex component RRP45A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329627, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4329627
    Gene description
    exosome complex component RRP45A
    Locus tag
    OSNPB_020550700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4329627 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21207062..21210369, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (20728286..20731663, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278049 Neighboring gene cytosolic invertase 1-like Neighboring gene protein FAR1-RELATED SEQUENCE 5 Neighboring gene ammonium transporter 3 member 3-like Neighboring gene serine/threonine-protein kinase SAPK6-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR AU-rich region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in TRAMP-dependent tRNA surveillance pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in U1 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in U4 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in U5 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear mRNA surveillance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytoplasmic exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exosome complex component RRP45A
    Names
    Os02g0550700
    P0451A10.31
    putative polymyositis/scleroderma autoantigen 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416667.1 → NP_001403596.1  exosome complex component RRP45A

      Status: VALIDATED

      Source sequence(s)
      AK071257, AP014958, CI772272
      UniProtKB/TrEMBL
      Q0E0H8, Q69T30

    2. NM_001417109.1 → NP_001404038.1  exosome complex component RRP45A

      Status: VALIDATED

      Source sequence(s)
      AK071257, AP014958, CI610401
      UniProtKB/TrEMBL
      Q0E0H8, Q69T30

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21207062..21210369 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767460.3 → XP_015622946.1  exosome complex component RRP45A isoform X2

      UniProtKB/TrEMBL
      A2X5Y3, Q0E0H8, Q69T30
      Conserved Domains (1) summary
      cd11368
      Location:9 → 269
      RNase_PH_RRP45; RRP45 subunit of eukaryotic exosome

    2. XM_015767458.3 → XP_015622944.1  exosome complex component RRP45A isoform X1

      UniProtKB/TrEMBL
      A2X5Y3
      Conserved Domains (1) summary
      cd11368
      Location:9 → 269
      RNase_PH_RRP45; RRP45 subunit of eukaryotic exosome

    3. XM_015767457.3 → XP_015622943.1  exosome complex component RRP45A isoform X1

      UniProtKB/TrEMBL
      A2X5Y3
      Conserved Domains (1) summary
      cd11368
      Location:9 → 269
      RNase_PH_RRP45; RRP45 subunit of eukaryotic exosome

    RNA

    1. XR_010738995.1 RNA Sequence

    2. XR_010738994.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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