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    LOC4341247 peroxidase P7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341247, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4341247
    Gene description
    peroxidase P7
    Locus tag
    OSNPB_060546500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    prx88
    Expression
    Biased expression in roots before flowering (RPKM 2.0) and flower buds (RPKM 0.5) See more
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    Genomic context

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    See LOC4341247 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (21534157..21535623, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20676201..20677678, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene O-fucosyltransferase 8 Neighboring gene uncharacterized LOC4341246 Neighboring gene peroxidase P7 Neighboring gene peroxidase P7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxidase P7
    Names
    OSJNBa0016D02.15
    Os06g0546500
    class III peroxidase 88
    putative bacterial-induced peroxidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      21534157..21535623 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788379.3 → XP_015643865.1  peroxidase P7

      UniProtKB/TrEMBL
      A0A0N7KM90, A2YDW8, Q5Z7K0
      Conserved Domains (2) summary
      cd00693
      Location:25 → 317
      secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases
      PLN03030
      Location:30 → 318
      PLN03030; cationic peroxidase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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