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    LOC9268322 ABC transporter G family member 49-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9268322, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC9268322
    Gene description
    ABC transporter G family member 49-like
    Locus tag
    OSNPB_120239900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PDR22; ABCG49; OsPDR22; OsABCG49; OsJ_35688
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    Genomic context

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    See LOC9268322 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (7771238..7789066, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (7731435..7749284, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene probable GPI-anchored adhesin-like protein PGA55 Neighboring gene uncharacterized LOC4351861 Neighboring gene uncharacterized LOC136354712 Neighboring gene protein NRT1/ PTR FAMILY 8.3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter G family member 49
    Names
    LOC_Os12g13720
    Os12g0239900
    Os12g0240000
    Pleiotropic drug resistance protein 22

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      7771238..7789066 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764684.3 → XP_015620170.1  ABC transporter G family member 49

      UniProtKB/Swiss-Prot
      B9GCJ4, C7J9R6, Q0IP72, Q2QV81
      UniProtKB/TrEMBL
      B8BP16
      Conserved Domains (1) summary
      PLN03140
      Location:78 → 1480
      PLN03140; ABC transporter G family member; Provisional

    RNA

    1. XR_010738574.1 RNA Sequence

    2. XR_010738573.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2QV81.3 GenPept UniProtKB/Swiss-Prot:Q2QV81

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