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    LOC4329350 aspartic proteinase 39 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329350, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329350
    Gene description
    aspartic proteinase 39
    Locus tag
    OSNPB_020473200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 26.6), mature seeds (RPKM 14.6) and 6 other tissues See more
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    Genomic context

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    See LOC4329350 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (16573999..16579481, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (16114932..16120435, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich receptor-like protein kinase 44 Neighboring gene riboflavin biosynthesis protein PYRR, chloroplastic Neighboring gene uncharacterized LOC107280087 Neighboring gene F-box only protein 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aspartic proteinase 39
    Names
    Os02g0473200
    P0046H03.30-1
    P0046H03.30-2
    P0046H03.30-3
    P0487H05.16-1
    P0487H05.16-2
    P0487H05.16-3
    nucellin-like aspartic protease-like
    putative aspartic proteinase nepenthesin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      16573999..16579481 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026023501.2 → XP_025879286.1  aspartic proteinase 39 isoform X2

      UniProtKB/TrEMBL
      B8AHK7
      Conserved Domains (1) summary
      cd05476
      Location:90 → 446
      pepsin_A_like_plant; Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

    2. XM_015771391.3 → XP_015626877.1  aspartic proteinase 39 isoform X1

      UniProtKB/TrEMBL
      B8AHK7, Q6K6I2, Q6K6M4
      Conserved Domains (1) summary
      cd05476
      Location:90 → 447
      pepsin_A_like_plant; Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants
    Nucleotide Protein
    Heading Accession and Version

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