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    LOC4340526 uncharacterized LOC4340526 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340526, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340526
    Gene description
    uncharacterized LOC4340526
    Locus tag
    OSNPB_060222800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0638H11.5
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 3.3), roots after flowering (RPKM 3.0) and 6 other tissues See more
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    Genomic context

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    See LOC4340526 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (6512217..6515705, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (6344151..6347670, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene probable trehalose-phosphate phosphatase 8 Neighboring gene ethylene-responsive transcription factor RAP2-13 Neighboring gene type I inositol polyphosphate 5-phosphatase 10 Neighboring gene syntaxin-23

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum-Golgi intermediate compartment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4340526
    Names
    Os06g0222800
    metallophosphoesterase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      6512217..6515705 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025960.2 → XP_025881745.1  uncharacterized protein LOC4340526

      UniProtKB/TrEMBL
      A0A0P0WU54, B8B420, Q67UJ7
      Conserved Domains (1) summary
      cd08165
      Location:82 → 356
      MPP_MPPE1; human MPPE1 and related proteins, metallophosphatase domain

    RNA

    1. XR_003242733.2 RNA Sequence

    2. XR_003242732.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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