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    LOC4324139 origin of replication complex subunit 4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324139, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4324139
    Gene description
    origin of replication complex subunit 4-like
    Locus tag
    OSNPB_010683400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ORC4; OsORC4; OsJ_03032; P0445E10.9
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    Genomic context

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    See LOC4324139 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28749802..28754185)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28161554..28166218)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene katanin p60 ATPase-containing subunit A1 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene CDP-diacylglycerol--serine O-phosphatidyltransferase 3-like Neighboring gene uncharacterized LOC4324140

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the origin recognition complex (ORC) from a higher plant, rice (Oryza sativa L.). Mori Y, et al. Gene, 2005 Jun 20. PMID 15939553
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA replication origin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA replication initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear origin of replication recognition complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    origin of replication complex subunit 4
    Names
    Os01g0683400
    origin recognition complex 4
    origin recognition complex subunit 4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424553.1 → NP_001411482.1  origin of replication complex subunit 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK102997
      UniProtKB/Swiss-Prot
      A0A0P0V6N4, B9EYM5, Q5N8Q4, Q7Y0X0

    2. NM_001424554.1 → NP_001411483.1  origin of replication complex subunit 4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AB110983, AK102997

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28749802..28754185
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5N8Q4.1 GenPept UniProtKB/Swiss-Prot:Q5N8Q4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials