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    LOC4332070 polygalacturonase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332070, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332070
    Gene description
    polygalacturonase
    Locus tag
    OSNPB_030216800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6199539..6202642)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6152056..6155200)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable glucan 1,3-alpha-glucosidase Neighboring gene protein DETOXIFICATION 42 Neighboring gene uncharacterized LOC4332071 Neighboring gene uncharacterized LOC9266402

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polygalacturonase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anther dehiscence IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fruit dehiscence IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polygalacturonase
    Names
    Os03g0216800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      6199539..6202642
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774774.3 → XP_015630260.1  polygalacturonase

      UniProtKB/TrEMBL
      A3AFI3, Q0DTY7, Q10PY4
      Conserved Domains (1) summary
      cl19188
      Location:64 → 408
      PL-6; Polysaccharide Lyase Family 6
    Nucleotide Protein
    Heading Accession and Version

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