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    LOC4350187 disease resistance protein RGA2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350187, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4350187
    Gene description
    disease resistance protein RGA2
    Locus tag
    OSNPB_110245800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 5.6), roots after flowering (RPKM 4.7) and 6 other tissues See more
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    Genomic context

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    See LOC4350187 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (8287881..8297583)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (7854946..7867596)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4350186 Neighboring gene uncharacterized LOC9271178 Neighboring gene uncharacterized LOC4350189 Neighboring gene F-box/kelch-repeat protein At2g44130

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RGA2
    Names
    Os11g0245800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      8287881..8297583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305328.1 → XP_066161425.1  disease resistance protein RGA2 isoform X3

      UniProtKB/TrEMBL
      B9GA58

    2. XM_066305329.1 → XP_066161426.1  disease resistance protein RGA2 isoform X3

      UniProtKB/TrEMBL
      B9GA58

    3. XM_015761936.3 → XP_015617422.1  disease resistance protein RGA2 isoform X3

      UniProtKB/TrEMBL
      B9GA58
      Conserved Domains (2) summary
      sd00033
      Location:980 → 1004
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:208 → 466
      NB-ARC; NB-ARC domain

    4. XM_066305330.1 → XP_066161427.1  disease resistance protein RGA2 isoform X3

      UniProtKB/TrEMBL
      B9GA58

    5. XM_015761933.3 → XP_015617419.1  disease resistance protein RGA2 isoform X1

      UniProtKB/TrEMBL
      B9GA58
      Conserved Domains (4) summary
      PLN03210
      Location:800 → 1095
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:980 → 1004
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:208 → 439
      NB-ARC; NB-ARC domain
      pfam18052
      Location:50 → 97
      Rx_N; Rx N-terminal domain

    6. XM_066305326.1 → XP_066161423.1  disease resistance protein RGA2 isoform X1

      UniProtKB/TrEMBL
      B9GA58

    7. XM_015761928.3 → XP_015617414.1  disease resistance protein RGA2 isoform X1

      UniProtKB/TrEMBL
      B9GA58
      Conserved Domains (4) summary
      PLN03210
      Location:800 → 1095
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:980 → 1004
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:208 → 439
      NB-ARC; NB-ARC domain
      pfam18052
      Location:50 → 97
      Rx_N; Rx N-terminal domain

    8. XM_015761931.3 → XP_015617417.1  disease resistance protein RGA2 isoform X1

      UniProtKB/TrEMBL
      B9GA58
      Conserved Domains (4) summary
      PLN03210
      Location:800 → 1095
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:980 → 1004
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:208 → 439
      NB-ARC; NB-ARC domain
      pfam18052
      Location:50 → 97
      Rx_N; Rx N-terminal domain

    9. XM_015761932.3 → XP_015617418.1  disease resistance protein RGA2 isoform X1

      UniProtKB/TrEMBL
      B9GA58
      Conserved Domains (4) summary
      PLN03210
      Location:800 → 1095
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00033
      Location:980 → 1004
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:208 → 439
      NB-ARC; NB-ARC domain
      pfam18052
      Location:50 → 97
      Rx_N; Rx N-terminal domain

    10. XM_015761937.3 → XP_015617423.1  disease resistance protein RGA2 isoform X4

      UniProtKB/TrEMBL
      B9GA58
      Conserved Domains (2) summary
      sd00033
      Location:980 → 1004
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:208 → 466
      NB-ARC; NB-ARC domain

    11. XM_066305327.1 → XP_066161424.1  disease resistance protein RGA2 isoform X2

      UniProtKB/TrEMBL
      B9GA58

    12. XM_015761934.3 → XP_015617420.1  disease resistance protein RGA2 isoform X2

      UniProtKB/TrEMBL
      B9GA58
      Conserved Domains (2) summary
      sd00033
      Location:980 → 1004
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:208 → 466
      NB-ARC; NB-ARC domain
    Nucleotide Protein
    Heading Accession and Version

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