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    LOC4344558 L-type lectin-domain containing receptor kinase IX.1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344558, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344558
    Gene description
    L-type lectin-domain containing receptor kinase IX.1
    Locus tag
    OSNPB_080124700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1126_D10.16
    Expression
    Biased expression in roots before flowering (RPKM 5.0) and flower buds (RPKM 0.2) See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (1382480..1385217, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1371043..1373775, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene L-type lectin-domain containing receptor kinase IX.1-like Neighboring gene L-type lectin-domain containing receptor kinase IX.1-like Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC107281884

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-type lectin-domain containing receptor kinase IX.1
    Names
    Os08g0124700
    putative receptor-type protein kinase LRK1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      1382480..1385217 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794308.3 → XP_015649794.1  L-type lectin-domain containing receptor kinase IX.1

      UniProtKB/TrEMBL
      B9FYV5, Q0J8A9, Q6ZFB3
      Conserved Domains (2) summary
      pfam00139
      Location:35 → 279
      Lectin_legB; Legume lectin domain
      cl21453
      Location:383 → 512
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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