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    LOC4324927 magnesium transporter MRS2-E-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324927, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4324927
    Gene description
    magnesium transporter MRS2-E-like
    Locus tag
    OSNPB_010869200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MRS2-E; OsMGT1; OsJ_04219
    Expression
    Broad expression in leaves after flowering (RPKM 22.6), roots after flowering (RPKM 16.4) and 6 other tissues See more
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    Genomic context

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    See LOC4324927 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38292682..38295723)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37664035..37667277)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324926 Neighboring gene cadmium/zinc-transporting ATPase HMA3-like Neighboring gene sister chromatid cohesion protein PDS5 homolog B Neighboring gene UDP-glycosyltransferase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Up-regulation of a magnesium transporter gene OsMGT1 is required for conferring aluminum tolerance in rice. Chen ZC, et al. Plant Physiol, 2012 Aug. PMID 22732245, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables magnesium ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in magnesium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    magnesium transporter MRS2-E
    Names
    LOC_Os01g64890
    Mg transporter
    P0677H08.30
    putative magnesium transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001396860.1 → NP_001383789.1  magnesium transporter MRS2-E

      Status: VALIDATED

      Source sequence(s)
      AB731703, CI246177, CI664759
      UniProtKB/Swiss-Prot
      A2WXD3, Q8S1N1
      UniProtKB/TrEMBL
      I7HHE1
      Conserved Domains (1) summary
      cd12823
      Location:28 → 416
      Mrs2_Mfm1p-like; Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38292682..38295723
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S1N1.1 GenPept UniProtKB/Swiss-Prot:Q8S1N1

    Gene LinkOut

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