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    LOC4341536 non-structural maintenance of chromosomes element 4 homolog A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341536, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341536
    Gene description
    non-structural maintenance of chromosomes element 4 homolog A
    Locus tag
    OSNPB_060618000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0012B02.6
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    Genomic context

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    See LOC4341536 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25667948..25670992)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24805437..24808590)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357077 Neighboring gene ribose-phosphate pyrophosphokinase 2, chloroplastic-like Neighboring gene zinc finger CCCH domain-containing protein 44-like Neighboring gene protein N-terminal asparagine amidohydrolase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Smc5-Smc6 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    non-structural maintenance of chromosomes element 4 homolog A
    Names
    Os06g0618000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      25667948..25670992
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785582.3 → XP_015641068.1  non-structural maintenance of chromosomes element 4 homolog A

      UniProtKB/TrEMBL
      A0A0P0WYU5, A3BDK6, B8B4M1, Q69XQ4
      Conserved Domains (1) summary
      pfam08743
      Location:215 → 300
      Nse4_C; Nse4 C-terminal
    Nucleotide Protein
    Heading Accession and Version

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