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    LOC4333526 protein NETWORKED 1A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333526, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4333526
    Gene description
    protein NETWORKED 1A
    Locus tag
    OSNPB_030637900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 29.6), flower buds (RPKM 16.9) and 3 other tissues See more
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    Genomic context

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    See LOC4333526 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (25289882..25299177, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (24426728..24436137, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat extensin-like protein 6 Neighboring gene serine/threonine-protein kinase-like protein CR4 Neighboring gene organic cation/carnitine transporter 7 Neighboring gene protein tesmin/TSO1-like CXC 2 Neighboring gene small nucleolar RNA Z178

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NETWORKED 1A
    Names
    Os03g0637900
    Os03g0638000
    centromere protein-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      25289882..25299177 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776197.3 → XP_015631683.1  protein NETWORKED 1A

      UniProtKB/TrEMBL
      A3AKP8, Q10GA5, Q75J40
      Conserved Domains (2) summary
      COG1196
      Location:269 → 1171
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam07765
      Location:14 → 87
      KIP1; KIP1-like protein
    Nucleotide Protein
    Heading Accession and Version

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