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    LOC4341648 protein S-acyltransferase 24 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341648, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341648
    Gene description
    protein S-acyltransferase 24
    Locus tag
    OSNPB_060644500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341648 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27160507..27167072)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26296673..26303223)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene pyrophosphate-energized vacuolar membrane proton pump Neighboring gene uncharacterized LOC4341646 Neighboring gene U3 small nucleolar RNA-associated protein 21 homolog Neighboring gene amino acid transporter AVT6E

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein palmitoylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein S-acyltransferase 24
    Names
    Os06g0644500
    P0017B12.15
    ankyrin repeat-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      27160507..27167072
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788830.3 → XP_015644316.1  protein S-acyltransferase 24

      UniProtKB/TrEMBL
      A0A0P0WZL7, B8B0Q0, B9FQ63, Q67WP3
      Conserved Domains (3) summary
      sd00045
      Location:85 → 116
      ANK; ANK repeat [structural motif]
      pfam01529
      Location:392 → 520
      DHHC; DHHC palmitoyltransferase
      pfam12796
      Location:157 → 251
      Ank_2; Ankyrin repeats (3 copies)

    RNA

    1. XR_010741956.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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