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    LOC4347142 ethylene-responsive transcription factor 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347142, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347142
    Gene description
    ethylene-responsive transcription factor 1-like
    Locus tag
    OSNPB_090434500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    EREBP; erebp-1; OJ1081_G10.25
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    Genomic context

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    See LOC4347142 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (20339050..20342244)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (15959406..15962645)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene AT-rich interactive domain-containing protein 4 Neighboring gene E3 ubiquitin-protein ligase AIP2 Neighboring gene uncharacterized LOC136351232 Neighboring gene uncharacterized LOC4347143 Neighboring gene uncharacterized LOC136351788

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development. Ye R, et al. Plant J, 2004 Apr. PMID 15078336
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ethylene-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor 1-like
    Names
    EREBP transcription factor
    EREBP-type transcription factor
    Os09g0434500
    putative EREBP transcription factor
    putative transcription factor EREBP1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      20339050..20342244
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756387.3 → XP_015611873.1  ethylene-responsive transcription factor 1-like

      UniProtKB/TrEMBL
      A3BZ54, Q0J1J9, Q1ZZM5, Q69PH3, Q8S4Y0
      Conserved Domains (1) summary
      smart00380
      Location:135 → 192
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    Nucleotide Protein
    Heading Accession and Version

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