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    LOC4351061 translationally-controlled tumor protein homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351061, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4351061
    Gene description
    translationally-controlled tumor protein homolog
    Locus tag
    OSNPB_110660500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TCTP
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    Genomic context

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    See LOC4351061 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (28472014..28474271, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (26510958..26513150, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein VIP3 Neighboring gene uncharacterized LOC4351060 Neighboring gene pentatricopeptide repeat-containing protein At4g14050, mitochondrial Neighboring gene uncharacterized LOC9269896

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    translationally-controlled tumor protein homolog
    Names
    21 kDa protein
    21kd polypeptide
    LOC_Os11g43900
    translational controlled tumor-like protein
    translational coutrolled tumor-like protein
    translationally controlled tumor protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404571.1 → NP_001391500.1  translationally-controlled tumor protein homolog

      Status: VALIDATED

      Source sequence(s)
      AK105453, BT131145, CF307722, CF307723
      UniProtKB/Swiss-Prot
      P35681, Q2R036
      UniProtKB/TrEMBL
      A3CDM6, Q0IR97

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      28472014..28474271 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P35681.1 GenPept UniProtKB/Swiss-Prot:P35681

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