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    LOC4334935 putative disease resistance RPP13-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334935, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4334935
    Gene description
    putative disease resistance RPP13-like protein 1
    Locus tag
    OSNPB_040111900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 12.3), leaves after flowering (RPKM 10.3) and 6 other tissues See more
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    Genomic context

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    See LOC4334935 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (688154..691618, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (682381..687735, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355989 Neighboring gene uncharacterized LOC4334934 Neighboring gene probable disease resistance RPP8-like protein 2 Neighboring gene transcription factor E2FC

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative disease resistance RPP13-like protein 1
    Names
    Os04g0111900
    Os04g02110-like protein
    putative NB-ARC domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      688154..691618 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781294.3 → XP_015636780.1  putative disease resistance RPP13-like protein 1

      UniProtKB/TrEMBL
      A0A0P0W6P6, Q01N57, Q7XQC5
      Conserved Domains (4) summary
      COG4886
      Location:563 → 683
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00031
      Location:592 → 614
      LRR_1; leucine-rich repeat [structural motif]
      sd00034
      Location:965 → 989
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00931
      Location:210 → 476
      NB-ARC; NB-ARC domain
    Nucleotide Protein
    Heading Accession and Version

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