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    LOC4346130 65-kDa microtubule-associated protein 8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346130, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346130
    Gene description
    65-kDa microtubule-associated protein 8
    Locus tag
    OSNPB_080531100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1789_C07.21
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    Genomic context

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    See LOC4346130 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26595152..26599537)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26448436..26452869)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene nucleotide pyrophosphatase/phosphodiesterase Neighboring gene uncharacterized LOC136351441 Neighboring gene uncharacterized LOC136351440 Neighboring gene uncharacterized LOC9272726 Neighboring gene uncharacterized LOC4346132 Neighboring gene squamosa promoter-binding-like protein 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in spindle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: 65-kDa microtubule-associated protein 8
    Names
    Os08g0531100
    putative microtubule-associated protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      26595152..26599537
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794922.3 → XP_015650408.2  LOW QUALITY PROTEIN: 65-kDa microtubule-associated protein 8

      UniProtKB/TrEMBL
      B8B931
      Conserved Domains (1) summary
      pfam03999
      Location:48 → 592
      MAP65_ASE1; Microtubule associated protein (MAP65/ASE1 family)
    Nucleotide Protein
    Heading Accession and Version

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