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    LOC4344777 clp protease adapter protein ClpF, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344777, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344777
    Gene description
    clp protease adapter protein ClpF, chloroplastic
    Locus tag
    OSNPB_080172200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1590_E05.35-1
    Expression
    Broad expression in leaves before flowering (RPKM 84.0), roots after flowering (RPKM 77.2) and 5 other tissues See more
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    Genomic context

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    See LOC4344777 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (4285290..4290851)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (4236970..4242566)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerases IV and V subunit 2 Neighboring gene protein MIZU-KUSSEI 1 Neighboring gene uncharacterized LOC136351371 Neighboring gene uncharacterized LOC136351372

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    clp protease adapter protein ClpF, chloroplastic
    Names
    Os08g0172200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      4285290..4290851
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795218.2 → XP_015650704.1  clp protease adapter protein ClpF, chloroplastic

      UniProtKB/TrEMBL
      B9FZB0, Q0J7Q1, Q6YYJ6
      Conserved Domains (2) summary
      pfam02151
      Location:157 → 187
      UVR; UvrB/uvrC motif
      pfam08755
      Location:204 → 301
      YccV-like; Hemimethylated DNA-binding protein YccV like
    Nucleotide Protein
    Heading Accession and Version

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