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    LOC4325060 uncharacterized LOC4325060 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325060, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325060
    Gene description
    uncharacterized LOC4325060
    Locus tag
    OSNPB_010859200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0489B03.7
    Expression
    Broad expression in flower buds (RPKM 57.6), leaves after flowering (RPKM 49.4) and 5 other tissues See more
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    Genomic context

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    See LOC4325060 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37780362..37784348)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37154418..37157378)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene sialyltransferase-like protein 1 Neighboring gene protein TRANSPARENT TESTA 1 Neighboring gene uncharacterized LOC136354497 Neighboring gene bZIP transcription factor ABI5 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4325060
    Names
    Os01g0859200
    P0683F02.35
    putative hydrolase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      37780362..37784348
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767022.3 → XP_015622508.1  uncharacterized protein LOC4325060

      UniProtKB/TrEMBL
      A0A0P0VAM0, A2WX66, Q94DD0
      Conserved Domains (1) summary
      COG0596
      Location:48 → 325
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]

    2. XM_015767024.3 → XP_015622510.1  uncharacterized protein LOC4325060

      UniProtKB/TrEMBL
      A0A0P0VAM0, A2WX66, Q94DD0
      Conserved Domains (1) summary
      COG0596
      Location:48 → 325
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]

    3. XM_026022346.2 → XP_025878131.1  uncharacterized protein LOC4325060

      UniProtKB/TrEMBL
      A0A0P0VAM0, A2WX66, Q94DD0
      Conserved Domains (1) summary
      COG0596
      Location:48 → 325
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]

    4. XM_026022345.2 → XP_025878130.1  uncharacterized protein LOC4325060

      UniProtKB/TrEMBL
      A0A0P0VAM0, A2WX66, Q94DD0
      Conserved Domains (1) summary
      COG0596
      Location:48 → 325
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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