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    LOC4347111 tetraspanin-8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347111, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347111
    Gene description
    tetraspanin-8
    Locus tag
    OSNPB_090425900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1299_A11.16-1
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    Genomic context

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    See LOC4347111 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (19822439..19824710)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (15444229..15446511)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene glycine-rich cell wall structural protein 2-like Neighboring gene protein YABBY 3-like Neighboring gene WAT1-related protein At4g28040 Neighboring gene WAT1-related protein At4g30420

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in auxin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasmodesma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tetraspanin-8
    Names
    Os09g0425900
    putative senescence-associated protein 5
    senescence-associated protein-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      19822439..19824710
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756353.3 → XP_015611839.1  tetraspanin-8

      UniProtKB/TrEMBL
      A2Z1E9, A3BZ05, Q69PB9, Q84VG2
      Conserved Domains (1) summary
      pfam00335
      Location:6 → 253
      Tetraspannin; Tetraspanin family
    Nucleotide Protein
    Heading Accession and Version

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