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    LOC4338480 N-terminal acetyltransferase B complex auxiliary subunit NAA25 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338480, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4338480
    Gene description
    N-terminal acetyltransferase B complex auxiliary subunit NAA25
    Locus tag
    OSNPB_050345400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338480 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (16343834..16355803, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (16253055..16265106, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939075 Neighboring gene patellin-6 Neighboring gene BTB/POZ domain-containing protein At2g30600 Neighboring gene uncharacterized LOC9267390

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in N-terminal peptidyl-methionine acetylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NatB complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    N-terminal acetyltransferase B complex auxiliary subunit NAA25
    Names
    Os05g0345400
    phagocyte signaling-impaired protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      16343834..16355803 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784840.2 → XP_015640326.1  N-terminal acetyltransferase B complex auxiliary subunit NAA25 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WL22, B8AX00, Q5W6S3
      Conserved Domains (2) summary
      sd00006
      Location:45 → 81
      TPR; TPR repeat [structural motif]
      pfam09797
      Location:296 → 639
      NatB_MDM20; N-acetyltransferase B complex (NatB) non catalytic subunit

    2. XM_015784841.3 → XP_015640327.1  N-terminal acetyltransferase B complex auxiliary subunit NAA25 isoform X2

      UniProtKB/TrEMBL
      B8AX00
      Conserved Domains (1) summary
      pfam09797
      Location:151 → 494
      NatB_MDM20; N-acetyltransferase B complex (NatB) non catalytic subunit
    Nucleotide Protein
    Heading Accession and Version

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