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    LOC4345183 pentatricopeptide repeat-containing protein At4g19440, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345183, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4345183
    Gene description
    pentatricopeptide repeat-containing protein At4g19440, chloroplastic
    Locus tag
    OSNPB_080290000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0467G09.1; OJ1034_C08.27
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    Genomic context

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    See LOC4345183 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (11622557..11629642, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (11547994..11555095, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein CHROMATIN REMODELING 35 Neighboring gene uncharacterized LOC136351329 Neighboring gene aberrant root formation protein 4 Neighboring gene uncharacterized LOC4345185

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The nuclear-localized PPR protein OsNPPR1 is important for mitochondrial function and endosperm development in rice. Hao Y, et al. J Exp Bot, 2019 Sep 24. PMID 31087099, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g19440, chloroplastic
    Names
    Os08g0290000
    pentatricopeptide (PPR) repeat-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      11622557..11629642 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303603.1 → XP_066159700.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X2

    2. XM_066303602.1 → XP_066159699.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X2

    3. XM_015794688.3 → XP_015650174.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6
      Conserved Domains (2) summary
      PLN03218
      Location:195 → 745
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:504 → 531
      PPR; PPR repeat [structural motif]

    4. XM_015794693.3 → XP_015650179.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6
      Conserved Domains (2) summary
      PLN03218
      Location:195 → 745
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:504 → 531
      PPR; PPR repeat [structural motif]

    5. XM_015794696.3 → XP_015650182.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6
      Conserved Domains (2) summary
      PLN03218
      Location:195 → 745
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:504 → 531
      PPR; PPR repeat [structural motif]

    6. XM_015794695.3 → XP_015650181.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6
      Conserved Domains (2) summary
      PLN03218
      Location:195 → 745
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:504 → 531
      PPR; PPR repeat [structural motif]

    7. XM_015794697.3 → XP_015650183.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6
      Conserved Domains (2) summary
      PLN03218
      Location:195 → 745
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:504 → 531
      PPR; PPR repeat [structural motif]

    8. XM_015794690.3 → XP_015650176.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6
      Conserved Domains (2) summary
      PLN03218
      Location:195 → 745
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:504 → 531
      PPR; PPR repeat [structural motif]

    9. XM_015794685.3 → XP_015650171.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6
      Conserved Domains (2) summary
      PLN03218
      Location:195 → 745
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:504 → 531
      PPR; PPR repeat [structural motif]

    10. XM_015794692.3 → XP_015650178.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6
      Conserved Domains (2) summary
      PLN03218
      Location:195 → 745
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:504 → 531
      PPR; PPR repeat [structural motif]

    11. XM_026027467.2 → XP_025883252.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6
      Conserved Domains (2) summary
      PLN03218
      Location:195 → 745
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:504 → 531
      PPR; PPR repeat [structural motif]

    12. XM_015794689.3 → XP_015650175.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6
      Conserved Domains (2) summary
      PLN03218
      Location:195 → 745
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:504 → 531
      PPR; PPR repeat [structural motif]

    13. XM_066303598.1 → XP_066159695.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6

    14. XM_066303597.1 → XP_066159694.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6

    15. XM_015794700.3 → XP_015650186.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6
      Conserved Domains (2) summary
      PLN03218
      Location:195 → 745
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:504 → 531
      PPR; PPR repeat [structural motif]

    16. XM_066303596.1 → XP_066159693.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6

    17. XM_066303599.1 → XP_066159696.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6

    18. XM_066303600.1 → XP_066159697.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6

    19. XM_066303601.1 → XP_066159698.1  pentatricopeptide repeat-containing protein At4g19440, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A3BRL1, Q6Z2B6
    Nucleotide Protein
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